Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs12240651 chr10:943656 A/G 3.34E-7 506 21.83 24.37 14.43 KM Plot
LGG rs12244253 chr10:889320 G/T 3.53E-7 505 21.7 24.5 14.43 KM Plot
LGG rs12244355 chr10:944465 T/C 3.57E-7 504 21.83 24.15 14.43 KM Plot
LGG rs12249634 chr10:872744 G/A 3.09E-6 505 21.85 24.23 14.47 KM Plot
LGG rs12249828 chr10:894838 C/T 3.68E-6 509 21.7 24.9 14.12 KM Plot
LGG rs12250936 chr10:870109 C/T 4.59E-7 508 21.7 24.52 14.43 KM Plot
LGG rs12250937 chr10:900209 C/T 2.11E-8 503 21.87 24.52 14.15 KM Plot
LGG rs12254002 chr10:929133 A/G 8.77E-5 509 14.5 24.15 21.77 KM Plot
LGG rs12258388 chr10:932956 A/G 7.35E-8 505 21.87 24.37 14.15 KM Plot
LGG rs12259720 chr10:967081 T/C 9.82E-5 506 23.53 22.73 14.65 KM Plot
LGG rs12260800 chr10:927933 T/C 5.39E-8 507 21.87 24.15 14.15 KM Plot
LGG rs12261911 chr10:938625 G/A 5.28E-7 507 21.83 24.23 14.43 KM Plot
LGG rs12264711 chr10:929525 T/C 8.46E-8 509 21.83 24.15 14.15 KM Plot
LGG rs12267709 chr10:938540 C/T 5.28E-7 507 21.83 24.23 14.43 KM Plot
LGG rs12347147 chr9:17859223 A/G 1.14E-6 509 23.82 19.03 NA KM Plot